RhesusBase ID | Lab | Individual | Sample | RPKM? | RPKM Level |
Housekeeping Genes | RB Score? | More |
RBNGS0120012 |
Burge |
B |
kidney |
47.82 (97.16) |
|
694.13 (99.93) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 2.96 | 72.10 |
GAPDH | 694.13 | 99.93 |
HMBS | 7.11 | 82.13 |
HPRT | 18.39 | 91.81 |
RPL13 | 192.02 | 99.57 |
TBP | 6.84 | 81.65 |
TUB | 9.57 | 85.60 |
|
7.59 (85.05) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 80/80 |
Raw reads | 217275344 |
Reads passing QC | N.A. |
High quality bases | 74/74 |
Uniquely-mapped reads | 147473828 |
High depth bases (>=10) | 62.72% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 22/17 |
SS rate | 97.88 |
Exonic RPKM/intronic RPKM | 73.09 |
Exonic RPKM/intergenic RPKM | 109.65 |
|
RBNGS0120021 |
Burge |
C |
kidney |
34.53 (96.52) |
|
208.26 (99.76) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 54.72 | 98.08 |
GAPDH | 208.26 | 99.76 |
HMBS | 4.09 | 74.71 |
HPRT | 21.45 | 93.64 |
RPL13 | 85.35 | 98.95 |
TBP | 6.24 | 80.13 |
TUB | 9.90 | 86.02 |
|
6.88 (70.1) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 80778138 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 63806261 |
High depth bases (>=10) | 40.95% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 5/13 |
SS rate | 97.08 |
Exonic RPKM/intronic RPKM | 52.55 |
Exonic RPKM/intergenic RPKM | 95.9 |
|
RBNGS0120003 |
Burge |
A |
kidney |
34.07 (95.7) |
|
522.74 (99.88) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 99.62 | 98.77 |
GAPDH | 522.74 | 99.88 |
HMBS | 5.95 | 80.57 |
HPRT | 14.99 | 90.19 |
RPL13 | 195.91 | 99.51 |
TBP | 3.98 | 75.85 |
TUB | 7.10 | 82.59 |
|
5.97 (40.72) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 63783494 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 44237090 |
High depth bases (>=10) | 31.76% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 40/40 |
SS rate | 96.07 |
Exonic RPKM/intronic RPKM | 100.1 |
Exonic RPKM/intergenic RPKM | 67.37 |
|
RBNGS0120023 |
Burge |
C |
lung |
19.23 (91.92) |
|
132.98 (99.35) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 131.18 | 99.34 |
GAPDH | 132.98 | 99.35 |
HMBS | 4.66 | 73.76 |
HPRT | 10.93 | 85.42 |
RPL13 | 194.05 | 99.58 |
TBP | 5.53 | 76.03 |
TUB | 10.20 | 84.50 |
|
7.14 (77.84) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 64799502 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 52500927 |
High depth bases (>=10) | 42.55% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 6/17 |
SS rate | 97.46 |
Exonic RPKM/intronic RPKM | 72.11 |
Exonic RPKM/intergenic RPKM | 170.57 |
|
RBNGS0120015 |
Burge |
B |
muscle |
18.63 (95.4) |
|
869.75 (99.94) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.43 | 61.90 |
GAPDH | 869.75 | 99.94 |
HMBS | 6.23 | 87.41 |
HPRT | 15.15 | 94.24 |
RPL13 | 74.32 | 99.02 |
TBP | 2.71 | 78.19 |
TUB | 4.92 | 84.92 |
|
6.18 (45.88) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 80/80 |
Raw reads | 229927714 |
Reads passing QC | N.A. |
High quality bases | 74/80 |
Uniquely-mapped reads | 130897620 |
High depth bases (>=10) | 52.93% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 74/78 |
SS rate | 98.0 |
Exonic RPKM/intronic RPKM | 65.88 |
Exonic RPKM/intergenic RPKM | 55.11 |
|
RBNGS0120020 |
Burge |
C |
heart |
18.51 (95.26) |
|
559.13 (99.91) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 17.19 | 94.90 |
GAPDH | 559.13 | 99.91 |
HMBS | 6.72 | 88.08 |
HPRT | 13.42 | 93.35 |
RPL13 | 68.87 | 98.84 |
TBP | 2.79 | 78.70 |
TUB | 4.99 | 85.16 |
|
5.48 (20.62) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 72203238 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 50240577 |
High depth bases (>=10) | 25.18% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 40/40 |
SS rate | 97.37 |
Exonic RPKM/intronic RPKM | 56.24 |
Exonic RPKM/intergenic RPKM | 53.32 |
|
RBNGS0120002 |
Burge |
A |
heart |
17.53 (95.2) |
|
814.11 (99.94) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 13.26 | 93.57 |
GAPDH | 814.11 | 99.94 |
HMBS | 5.57 | 86.56 |
HPRT | 10.91 | 92.33 |
RPL13 | 90.28 | 99.28 |
TBP | 2.64 | 78.39 |
TUB | 3.89 | 82.63 |
|
5.48 (20.62) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 70496084 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 46294475 |
High depth bases (>=10) | 23.51% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 40/40 |
SS rate | 96.89 |
Exonic RPKM/intronic RPKM | 68.0 |
Exonic RPKM/intergenic RPKM | 44.05 |
|
RBNGS0120014 |
Burge |
B |
lung |
17.41 (91.98) |
|
169.19 (99.56) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 4.56 | 75.39 |
GAPDH | 169.19 | 99.56 |
HMBS | 4.53 | 75.34 |
HPRT | 12.95 | 88.87 |
RPL13 | 192.09 | 99.62 |
TBP | 7.24 | 81.61 |
TUB | 10.78 | 86.74 |
|
7.58 (84.02) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 80/80 |
Raw reads | 225465734 |
Reads passing QC | N.A. |
High quality bases | 74/74 |
Uniquely-mapped reads | 174916429 |
High depth bases (>=10) | 66.63% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 14/6 |
SS rate | 97.13 |
Exonic RPKM/intronic RPKM | 52.28 |
Exonic RPKM/intergenic RPKM | 134.9 |
|
RBNGS0120013 |
Burge |
B |
liver |
15.28 (93.81) |
|
370.40 (99.71) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.88 | 74.18 |
GAPDH | 370.40 | 99.71 |
HMBS | 7.41 | 88.63 |
HPRT | 17.40 | 94.55 |
RPL13 | 137.02 | 99.29 |
TBP | 3.11 | 79.41 |
TUB | 1.17 | 69.96 |
|
7.78 (90.21) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 80/80 |
Raw reads | 226189878 |
Reads passing QC | N.A. |
High quality bases | 74/79 |
Uniquely-mapped reads | 169535451 |
High depth bases (>=10) | 54.2% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 16/7 |
SS rate | 98.58 |
Exonic RPKM/intronic RPKM | 78.41 |
Exonic RPKM/intergenic RPKM | 206.32 |
|
RBNGS0120005 |
Burge |
A |
lung |
12.78 (88.84) |
|
85.86 (99.12) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 147.12 | 99.55 |
GAPDH | 85.86 | 99.12 |
HMBS | 3.09 | 69.63 |
HPRT | 14.15 | 90.06 |
RPL13 | 174.69 | 99.67 |
TBP | 6.36 | 79.31 |
TUB | 10.95 | 86.89 |
|
6.92 (71.65) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 76590660 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 62457814 |
High depth bases (>=10) | 45.37% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 5/13 |
SS rate | 96.71 |
Exonic RPKM/intronic RPKM | 46.72 |
Exonic RPKM/intergenic RPKM | 114.83 |
|
RBNGS0120022 |
Burge |
C |
liver |
11.47 (91.42) |
|
252.91 (99.55) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 40.36 | 97.30 |
GAPDH | 252.91 | 99.55 |
HMBS | 7.18 | 87.37 |
HPRT | 17.89 | 94.22 |
RPL13 | 148.09 | 99.23 |
TBP | 2.75 | 76.72 |
TUB | 1.43 | 69.96 |
|
7.1 (76.8) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 53401364 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 43475483 |
High depth bases (>=10) | 24.11% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 7/14 |
SS rate | 98.45 |
Exonic RPKM/intronic RPKM | 111.78 |
Exonic RPKM/intergenic RPKM | 228.23 |
|
RBNGS0120009 |
Burge |
B |
brain |
8.64 (84.4) |
|
593.73 (99.98) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 42.48 | 97.66 |
GAPDH | 593.73 | 99.98 |
HMBS | 3.83 | 73.63 |
HPRT | 28.08 | 95.82 |
RPL13 | 83.57 | 99.15 |
TBP | 4.34 | 75.24 |
TUB | 34.73 | 96.91 |
|
7.66 (88.14) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 80/80 |
Raw reads | 215339102 |
Reads passing QC | N.A. |
High quality bases | 74/74 |
Uniquely-mapped reads | 162476514 |
High depth bases (>=10) | 69.37% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 9/7 |
SS rate | 97.36 |
Exonic RPKM/intronic RPKM | 56.19 |
Exonic RPKM/intergenic RPKM | 108.37 |
|
RBNGS0120018 |
Burge |
C |
brain |
7.97 (84.54) |
|
601.19 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 74.73 | 98.98 |
GAPDH | 601.19 | 99.99 |
HMBS | 3.27 | 73.29 |
HPRT | 40.36 | 97.55 |
RPL13 | 68.87 | 98.85 |
TBP | 5.56 | 80.14 |
TUB | 20.96 | 94.20 |
|
6.36 (52.06) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 52974974 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 41027759 |
High depth bases (>=10) | 32.99% |
Transcript Fragmentation Effect | 0.9 |
High mismatch bases | 6/24 |
SS rate | 96.94 |
Exonic RPKM/intronic RPKM | 44.57 |
Exonic RPKM/intergenic RPKM | 80.84 |
|
RBNGS0120004 |
Burge |
A |
liver |
7.75 (86.82) |
|
367.17 (99.72) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 67.05 | 98.34 |
GAPDH | 367.17 | 99.72 |
HMBS | 7.63 | 86.63 |
HPRT | 14.02 | 92.07 |
RPL13 | 117.61 | 99.12 |
TBP | 2.75 | 74.85 |
TUB | 1.78 | 70.31 |
|
7.07 (75.77) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 57111576 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 45700755 |
High depth bases (>=10) | 27.85% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 7/18 |
SS rate | 98.29 |
Exonic RPKM/intronic RPKM | 93.95 |
Exonic RPKM/intergenic RPKM | 180.37 |
|
RBNGS0120000 |
Burge |
A |
brain |
7.72 (84.22) |
|
552.62 (99.98) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 45.11 | 98.15 |
GAPDH | 552.62 | 99.98 |
HMBS | 2.44 | 69.99 |
HPRT | 57.85 | 98.70 |
RPL13 | 54.44 | 98.59 |
TBP | 5.12 | 78.92 |
TUB | 26.95 | 96.10 |
|
6.68 (60.31) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 70133526 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 52629200 |
High depth bases (>=10) | 39.8% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 5/5 |
SS rate | 96.86 |
Exonic RPKM/intronic RPKM | 46.41 |
Exonic RPKM/intergenic RPKM | 79.4 |
|
RBNGS0120024 |
Burge |
C |
muscle |
7.05 (88.51) |
|
3166.11 (99.96) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 11.29 | 92.00 |
GAPDH | 3166.11 | 99.96 |
HMBS | 10.04 | 91.23 |
HPRT | 8.32 | 89.80 |
RPL13 | 178.69 | 99.50 |
TBP | 2.74 | 79.35 |
TUB | 1.38 | 72.52 |
|
6.78 (64.43) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 68542974 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 53187933 |
High depth bases (>=10) | 25.81% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 8/37 |
SS rate | 98.22 |
Exonic RPKM/intronic RPKM | 136.78 |
Exonic RPKM/intergenic RPKM | 160.6 |
|
RBNGS0120010 |
Burge |
B |
colon |
6.54 (79.83) |
|
433.31 (99.85) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 7.84 | 82.20 |
GAPDH | 433.31 | 99.85 |
HMBS | 12.16 | 87.55 |
HPRT | 13.86 | 88.99 |
RPL13 | 287.16 | 99.74 |
TBP | 6.42 | 79.56 |
TUB | 2.92 | 70.16 |
|
7.65 (86.6) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 80/80 |
Raw reads | 209648898 |
Reads passing QC | N.A. |
High quality bases | 79/80 |
Uniquely-mapped reads | 151645537 |
High depth bases (>=10) | 64.39% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 16/8 |
SS rate | 97.57 |
Exonic RPKM/intronic RPKM | 59.34 |
Exonic RPKM/intergenic RPKM | 129.41 |
|
RBNGS0120011 |
Burge |
B |
heart |
6.46 (87.62) |
|
7151.00 (99.98) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.14 | 72.00 |
GAPDH | 7151.00 | 99.98 |
HMBS | 13.67 | 93.03 |
HPRT | 7.67 | 89.01 |
RPL13 | 284.68 | 99.68 |
TBP | 2.50 | 78.97 |
TUB | 1.57 | 74.77 |
|
7.65 (86.6) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 80/80 |
Raw reads | 218386186 |
Reads passing QC | N.A. |
High quality bases | 74/74 |
Uniquely-mapped reads | 158662788 |
High depth bases (>=10) | 50.66% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 19/14 |
SS rate | 98.48 |
Exonic RPKM/intronic RPKM | 155.54 |
Exonic RPKM/intergenic RPKM | 242.85 |
|
RBNGS0120001 |
Burge |
A |
colon |
5.60 (78.02) |
|
426.94 (99.88) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 112.77 | 99.07 |
GAPDH | 426.94 | 99.88 |
HMBS | 12.80 | 87.90 |
HPRT | 24.73 | 94.01 |
RPL13 | 190.22 | 99.56 |
TBP | 6.68 | 80.19 |
TUB | 2.37 | 68.33 |
|
6.59 (57.22) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 47455076 |
Reads passing QC | N.A. |
High quality bases | 40/39 |
Uniquely-mapped reads | 35068624 |
High depth bases (>=10) | 31.45% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 7/26 |
SS rate | 97.19 |
Exonic RPKM/intronic RPKM | 53.5 |
Exonic RPKM/intergenic RPKM | 110.01 |
|
RBNGS0120019 |
Burge |
C |
colon |
4.34 (74.06) |
|
546.43 (99.88) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 258.41 | 99.60 |
GAPDH | 546.43 | 99.88 |
HMBS | 16.05 | 89.42 |
HPRT | 12.20 | 86.46 |
RPL13 | 263.53 | 99.62 |
TBP | 6.61 | 79.11 |
TUB | 0.94 | 60.04 |
|
7.01 (74.74) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 80459578 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 61359099 |
High depth bases (>=10) | 40.27% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 6/16 |
SS rate | 97.44 |
Exonic RPKM/intronic RPKM | 66.18 |
Exonic RPKM/intergenic RPKM | 141.2 |
|
RBNGS0120025 |
Burge |
C |
spleen |
4.11 (73.2) |
|
134.12 (99.41) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 186.13 | 99.59 |
GAPDH | 134.12 | 99.41 |
HMBS | 4.18 | 73.40 |
HPRT | 8.28 | 82.32 |
RPL13 | 323.15 | 99.83 |
TBP | 5.72 | 77.51 |
TUB | 4.76 | 75.06 |
|
6.95 (73.71) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 79624920 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 63060479 |
High depth bases (>=10) | 42.22% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 4/9 |
SS rate | 97.09 |
Exonic RPKM/intronic RPKM | 48.1 |
Exonic RPKM/intergenic RPKM | 136.77 |
|
RBNGS0120016 |
Burge |
B |
spleen |
3.98 (73.04) |
|
243.82 (99.72) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 4.45 | 74.42 |
GAPDH | 243.82 | 99.72 |
HMBS | 6.27 | 78.97 |
HPRT | 15.88 | 90.98 |
RPL13 | 402.74 | 99.87 |
TBP | 6.44 | 79.33 |
TUB | 4.17 | 73.60 |
|
7.32 (82.99) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 80/80 |
Raw reads | 195426556 |
Reads passing QC | N.A. |
High quality bases | 74/69 |
Uniquely-mapped reads | 143745245 |
High depth bases (>=10) | 65.02% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 15/10 |
SS rate | 96.85 |
Exonic RPKM/intronic RPKM | 41.44 |
Exonic RPKM/intergenic RPKM | 126.74 |
|
RBNGS0120007 |
Burge |
A |
spleen |
3.60 (71.64) |
|
152.34 (99.53) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 222.13 | 99.72 |
GAPDH | 152.34 | 99.53 |
HMBS | 3.83 | 72.46 |
HPRT | 21.74 | 94.01 |
RPL13 | 338.92 | 99.87 |
TBP | 6.29 | 79.02 |
TUB | 6.17 | 78.75 |
|
6.81 (65.98) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 81250632 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 65191199 |
High depth bases (>=10) | 44.29% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 5/8 |
SS rate | 96.3 |
Exonic RPKM/intronic RPKM | 37.07 |
Exonic RPKM/intergenic RPKM | 98.25 |
|
RBNGS0120008 |
Burge |
A |
testis |
3.25 (68.69) |
|
237.29 (99.55) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 102.43 | 98.41 |
GAPDH | 237.29 | 99.55 |
HMBS | 4.42 | 72.47 |
HPRT | 57.12 | 96.49 |
RPL13 | 353.87 | 99.78 |
TBP | 119.73 | 98.73 |
TUB | 5.97 | 76.11 |
|
7.23 (80.93) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 56979544 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 43895796 |
High depth bases (>=10) | 34.64% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 5/10 |
SS rate | 96.75 |
Exonic RPKM/intronic RPKM | 115.46 |
Exonic RPKM/intergenic RPKM | 148.02 |
|
RBNGS0120006 |
Burge |
A |
muscle |
2.84 (85.11) |
|
10528.36 (99.98) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 14.90 | 94.39 |
GAPDH | 10528.36 | 99.98 |
HMBS | 19.96 | 95.49 |
HPRT | 3.96 | 87.29 |
RPL13 | 333.98 | 99.70 |
TBP | 2.18 | 83.22 |
TUB | 0.97 | 77.10 |
|
6.54 (54.12) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 62399904 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 45738360 |
High depth bases (>=10) | 16.69% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 14/40 |
SS rate | 98.27 |
Exonic RPKM/intronic RPKM | 304.93 |
Exonic RPKM/intergenic RPKM | 183.33 |
|
RBNGS0120026 |
Burge |
C |
testis |
2.58 (63.2) |
|
123.59 (99.40) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 41.22 | 96.24 |
GAPDH | 123.59 | 99.40 |
HMBS | 2.94 | 64.87 |
HPRT | 59.25 | 97.82 |
RPL13 | 121.99 | 99.39 |
TBP | 119.91 | 99.37 |
TUB | 5.91 | 74.39 |
|
7.16 (78.87) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 40/40 |
Raw reads | 55608632 |
Reads passing QC | N.A. |
High quality bases | 40/40 |
Uniquely-mapped reads | 44753428 |
High depth bases (>=10) | 39.65% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 5/10 |
SS rate | 95.78 |
Exonic RPKM/intronic RPKM | 68.97 |
Exonic RPKM/intergenic RPKM | 114.36 |
|
RBNGS0120017 |
Burge |
B |
testis |
1.67 (61.45) |
|
105.21 (99.15) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.28 | 58.72 |
GAPDH | 105.21 | 99.15 |
HMBS | 1.83 | 62.55 |
HPRT | 48.73 | 97.09 |
RPL13 | 101.59 | 99.11 |
TBP | 137.48 | 99.49 |
TUB | 5.62 | 76.54 |
|
7.69 (89.18) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2012-10-17 |
Read length | 80/80 |
Raw reads | 230883638 |
Reads passing QC | N.A. |
High quality bases | 69/74 |
Uniquely-mapped reads | 177396654 |
High depth bases (>=10) | 68.67% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 14/6 |
SS rate | 95.4 |
Exonic RPKM/intronic RPKM | 64.2 |
Exonic RPKM/intergenic RPKM | 99.71 |
|
RBNGS0120027 |
Charles |
150-99 |
lymphoblastoid |
0.92 (61.81) |
|
3590.65 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.22 | 64.16 |
GAPDH | 3590.65 | 99.99 |
HMBS | 28.86 | 93.17 |
HPRT | 21.29 | 90.90 |
RPL13 | 3243.56 | 99.98 |
TBP | 13.74 | 87.04 |
TUB | 0.16 | 50.26 |
|
5.9 (37.63) |
[+]
Gender | Female |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2012-06-07 |
Read length | 36 |
Raw reads | 13335185 |
Reads passing QC | N.A. |
High quality bases | 36 |
Uniquely-mapped reads | 8253725 |
High depth bases (>=10) | 8.91% |
Transcript Fragmentation Effect | 0.94 |
High mismatch bases | 4 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 87.5 |
Exonic RPKM/intergenic RPKM | 173.71 |
|
RBNGS0120030 |
Charles |
256-95 |
lymphoblastoid |
0.29 (56.3) |
|
3288.60 (99.98) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 3.41 | 74.16 |
GAPDH | 3288.60 | 99.98 |
HMBS | 19.50 | 89.59 |
HPRT | 18.33 | 89.08 |
RPL13 | 4579.77 | 100.00 |
TBP | 12.96 | 86.37 |
TUB | 0.00 | 24.63 |
|
5.81 (32.47) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2012-06-07 |
Read length | 36 |
Raw reads | 8848655 |
Reads passing QC | N.A. |
High quality bases | 36 |
Uniquely-mapped reads | 5239116 |
High depth bases (>=10) | 5.82% |
Transcript Fragmentation Effect | 0.94 |
High mismatch bases | 5 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 107.39 |
Exonic RPKM/intergenic RPKM | 205.13 |
|
RBNGS0120031 |
Charles |
265-95 |
lymphoblastoid |
0.07 (50.77) |
|
4220.63 (100.00) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 118.45 | 98.47 |
GAPDH | 4220.63 | 100.00 |
HMBS | 19.73 | 89.85 |
HPRT | 15.54 | 87.88 |
RPL13 | 3878.86 | 99.99 |
TBP | 15.29 | 87.73 |
TUB | 0.78 | 61.85 |
|
5.83 (35.05) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2012-06-07 |
Read length | 36 |
Raw reads | 8722182 |
Reads passing QC | N.A. |
High quality bases | 36 |
Uniquely-mapped reads | 5177576 |
High depth bases (>=10) | 5.77% |
Transcript Fragmentation Effect | 0.95 |
High mismatch bases | 5 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 93.24 |
Exonic RPKM/intergenic RPKM | 190.77 |
|
RBNGS0120032 |
Charles |
303-97 |
lymphoblastoid |
0.07 (50.11) |
|
3680.10 (100.00) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 29.70 | 93.22 |
GAPDH | 3680.10 | 100.00 |
HMBS | 11.86 | 85.05 |
HPRT | 22.26 | 91.02 |
RPL13 | 1845.22 | 99.97 |
TBP | 9.58 | 82.72 |
TUB | 0.05 | 48.95 |
|
5.92 (38.66) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2012-06-07 |
Read length | 36 |
Raw reads | 17484757 |
Reads passing QC | N.A. |
High quality bases | 36 |
Uniquely-mapped reads | 10880601 |
High depth bases (>=10) | 12.75% |
Transcript Fragmentation Effect | 0.95 |
High mismatch bases | 5 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 82.61 |
Exonic RPKM/intergenic RPKM | 213.32 |
|
RBNGS0120028 |
Charles |
153-99 |
lymphoblastoid |
0.04 (51.34) |
|
4927.60 (100.00) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 149.08 | 98.82 |
GAPDH | 4927.60 | 100.00 |
HMBS | 18.79 | 89.53 |
HPRT | 17.59 | 89.02 |
RPL13 | 2931.46 | 99.98 |
TBP | 12.46 | 85.88 |
TUB | 0.00 | 25.49 |
|
5.83 (35.05) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2012-06-07 |
Read length | 36 |
Raw reads | 6935762 |
Reads passing QC | N.A. |
High quality bases | 36 |
Uniquely-mapped reads | 4248583 |
High depth bases (>=10) | 4.87% |
Transcript Fragmentation Effect | 0.95 |
High mismatch bases | 5 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 109.27 |
Exonic RPKM/intergenic RPKM | 201.29 |
|
RBNGS0120029 |
Charles |
173-02 |
lymphoblastoid |
0.02 (47.3) |
|
3034.59 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.76 | 61.79 |
GAPDH | 3034.59 | 99.99 |
HMBS | 14.67 | 87.69 |
HPRT | 22.93 | 91.50 |
RPL13 | 2442.91 | 99.99 |
TBP | 8.51 | 82.16 |
TUB | 0.39 | 57.84 |
|
5.81 (32.47) |
[+]
Gender | Female |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2012-06-07 |
Read length | 36 |
Raw reads | 15212293 |
Reads passing QC | N.A. |
High quality bases | 36 |
Uniquely-mapped reads | 9490151 |
High depth bases (>=10) | 10.54% |
Transcript Fragmentation Effect | 0.94 |
High mismatch bases | 4 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 71.28 |
Exonic RPKM/intergenic RPKM | 181.09 |
|
RBNGS0120036 |
Gilad2010 |
male1 |
liver |
15.83 (92.2) |
|
284.57 (99.59) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.26 | 50.79 |
GAPDH | 284.57 | 99.59 |
HMBS | 10.51 | 88.55 |
HPRT | 12.51 | 90.31 |
RPL13 | 202.50 | 99.42 |
TBP | 3.42 | 73.78 |
TUB | 1.32 | 62.74 |
|
5.74 (29.38) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Yerkes |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2009-12-18 |
Read length | 35 |
Raw reads | 15499565 |
Reads passing QC | N.A. |
High quality bases | 30 |
Uniquely-mapped reads | 10633133 |
High depth bases (>=10) | 6.77% |
Transcript Fragmentation Effect | 0.95 |
High mismatch bases | 6 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 82.82 |
Exonic RPKM/intergenic RPKM | 240.16 |
|
RBNGS0120034 |
Gilad2010 |
female2 |
liver |
14.24 (91.38) |
|
265.16 (99.54) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.22 | 49.82 |
GAPDH | 265.16 | 99.54 |
HMBS | 6.76 | 83.31 |
HPRT | 8.48 | 86.24 |
RPL13 | 179.12 | 99.35 |
TBP | 2.90 | 72.13 |
TUB | 1.22 | 62.27 |
|
5.58 (22.16) |
[+]
Gender | Female |
Age (Year) | N.A. |
Origin | Yerkes |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2009-12-18 |
Read length | 35 |
Raw reads | 11790953 |
Reads passing QC | N.A. |
High quality bases | 30 |
Uniquely-mapped reads | 7743337 |
High depth bases (>=10) | 4.91% |
Transcript Fragmentation Effect | 0.95 |
High mismatch bases | 10 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 83.45 |
Exonic RPKM/intergenic RPKM | 224.45 |
|
RBNGS0120033 |
Gilad2010 |
female1 |
liver |
14.09 (90.99) |
|
246.59 (99.52) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.76 | 65.08 |
GAPDH | 246.59 | 99.52 |
HMBS | 9.53 | 87.03 |
HPRT | 10.61 | 88.27 |
RPL13 | 162.41 | 99.29 |
TBP | 3.71 | 74.33 |
TUB | 2.30 | 68.26 |
|
5.67 (24.23) |
[+]
Gender | Female |
Age (Year) | N.A. |
Origin | SFBR |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2009-12-18 |
Read length | 35 |
Raw reads | 13971254 |
Reads passing QC | N.A. |
High quality bases | 30 |
Uniquely-mapped reads | 9515841 |
High depth bases (>=10) | 6.22% |
Transcript Fragmentation Effect | 0.94 |
High mismatch bases | 8 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 82.54 |
Exonic RPKM/intergenic RPKM | 229.62 |
|
RBNGS0120035 |
Gilad2010 |
female3 |
liver |
13.38 (89.19) |
|
509.01 (99.75) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.15 | 45.66 |
GAPDH | 509.01 | 99.75 |
HMBS | 14.08 | 89.66 |
HPRT | 5.45 | 78.19 |
RPL13 | 244.06 | 99.51 |
TBP | 3.88 | 73.61 |
TUB | 0.92 | 58.40 |
|
5.71 (26.8) |
[+]
Gender | Female |
Age (Year) | N.A. |
Origin | Yerkes |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2009-12-18 |
Read length | 35 |
Raw reads | 16014011 |
Reads passing QC | N.A. |
High quality bases | 30 |
Uniquely-mapped reads | 11153343 |
High depth bases (>=10) | 8.3% |
Transcript Fragmentation Effect | 0.95 |
High mismatch bases | 6 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 76.13 |
Exonic RPKM/intergenic RPKM | 254.76 |
|
RBNGS0120038 |
Gilad2010 |
male3 |
liver |
9.62 (86.29) |
|
295.78 (99.68) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 2.38 | 69.28 |
GAPDH | 295.78 | 99.68 |
HMBS | 11.19 | 87.91 |
HPRT | 3.16 | 72.50 |
RPL13 | 300.36 | 99.68 |
TBP | 2.86 | 71.30 |
TUB | 1.15 | 62.00 |
|
5.77 (30.41) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Yerkes |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2009-12-18 |
Read length | 35 |
Raw reads | 13591983 |
Reads passing QC | N.A. |
High quality bases | 30 |
Uniquely-mapped reads | 9362596 |
High depth bases (>=10) | 6.5% |
Transcript Fragmentation Effect | 0.95 |
High mismatch bases | 5 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 97.79 |
Exonic RPKM/intergenic RPKM | 290.99 |
|
RBNGS0120037 |
Gilad2010 |
male2 |
liver |
6.43 (85.29) |
|
342.77 (99.68) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 2.06 | 72.68 |
GAPDH | 342.77 | 99.68 |
HMBS | 9.01 | 88.49 |
HPRT | 13.86 | 91.98 |
RPL13 | 271.46 | 99.61 |
TBP | 3.01 | 76.97 |
TUB | 0.19 | 50.56 |
|
5.13 (15.98) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | A.Stone |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2009-12-18 |
Read length | 35 |
Raw reads | 14953138 |
Reads passing QC | N.A. |
High quality bases | 30 |
Uniquely-mapped reads | 9775666 |
High depth bases (>=10) | 5.5% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 13 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 52.84 |
Exonic RPKM/intergenic RPKM | 154.69 |
|
RBNGS0120039 |
Gilad2011 |
RNA R1 |
lymphoblastoid |
0.33 (57.79) |
|
2783.10 (99.96) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.86 | 62.95 |
GAPDH | 2783.10 | 99.96 |
HMBS | 11.85 | 84.19 |
HPRT | 28.50 | 92.33 |
RPL13 | 1710.21 | 99.95 |
TBP | 20.85 | 89.70 |
TUB | 0.02 | 48.77 |
|
5.97 (40.72) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2010-09-28 |
Read length | 36 |
Raw reads | 13600890 |
Reads passing QC | N.A. |
High quality bases | 36 |
Uniquely-mapped reads | 9103949 |
High depth bases (>=10) | 11.41% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 4 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 156.17 |
Exonic RPKM/intergenic RPKM | 360.28 |
|
RBNGS0120040 |
Gilad2011 |
RNA R2 |
lymphoblastoid |
0.08 (51.63) |
|
2909.34 (99.96) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.23 | 65.33 |
GAPDH | 2909.34 | 99.96 |
HMBS | 15.80 | 86.75 |
HPRT | 25.07 | 90.96 |
RPL13 | 1736.08 | 99.95 |
TBP | 19.32 | 88.62 |
TUB | 0.00 | 24.26 |
|
5.97 (40.72) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2010-09-28 |
Read length | 36 |
Raw reads | 14354061 |
Reads passing QC | N.A. |
High quality bases | 36 |
Uniquely-mapped reads | 9495937 |
High depth bases (>=10) | 12.22% |
Transcript Fragmentation Effect | 0.94 |
High mismatch bases | 4 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 180.52 |
Exonic RPKM/intergenic RPKM | 368.45 |
|
RBNGS0120041 |
Gilad2011 |
RNA R3 |
lymphoblastoid |
0.02 (48.4) |
|
2868.12 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.75 | 61.94 |
GAPDH | 2868.12 | 99.99 |
HMBS | 15.90 | 86.18 |
HPRT | 25.00 | 90.58 |
RPL13 | 1707.09 | 99.96 |
TBP | 15.73 | 86.09 |
TUB | 0.00 | 24.07 |
|
5.98 (43.3) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2010-09-28 |
Read length | 36 |
Raw reads | 14664858 |
Reads passing QC | N.A. |
High quality bases | 36 |
Uniquely-mapped reads | 9720617 |
High depth bases (>=10) | 13.66% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 4 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 183.42 |
Exonic RPKM/intergenic RPKM | 352.8 |
|
RBNGS0120042 |
JD |
mixtured |
frontal cerebral cortex |
5.89 (71.64) |
|
997.88 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 5.55 | 70.66 |
GAPDH | 997.88 | 99.99 |
HMBS | 8.64 | 77.43 |
HPRT | 41.69 | 95.43 |
RPL13 | 131.23 | 99.06 |
TBP | 5.98 | 71.87 |
TUB | 53.79 | 96.70 |
|
6.08 (44.85) |
[+]
Gender | Male |
Age (Year) | mix five male individuals of 8, 9, 10, 11 and 14 y |
Origin | SuZhou, China |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA IIx |
Submission date | 2010-10-13 |
Read length | 76/76 |
Raw reads | 34644716 |
Reads passing QC | N.A. |
High quality bases | 59/49 |
Uniquely-mapped reads | 22015795 |
High depth bases (>=10) | 41.47% |
Transcript Fragmentation Effect | 0.82 |
High mismatch bases | 18/22 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 90.33 |
Exonic RPKM/intergenic RPKM | 171.74 |
|
RBNGS0120051 |
Kaessmann |
male1 |
kidney |
24.80 (94.86) |
|
711.25 (99.96) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.48 | 51.43 |
GAPDH | 711.25 | 99.96 |
HMBS | 6.69 | 80.77 |
HPRT | 4.75 | 75.66 |
RPL13 | 98.67 | 99.16 |
TBP | 5.27 | 77.27 |
TUB | 6.63 | 80.70 |
|
4.07 (13.92) |
[+]
Gender | Male |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 8.3 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 24115366 |
Reads passing QC | N.A. |
High quality bases | 0 |
Uniquely-mapped reads | 8116461 |
High depth bases (>=10) | 13.44% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 76 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 47.21 |
Exonic RPKM/intergenic RPKM | 50.49 |
|
RBNGS0120046 |
Kaessmann |
female |
kidney |
22.49 (91.64) |
|
1081.82 (99.97) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.23 | 55.82 |
GAPDH | 1081.82 | 99.97 |
HMBS | 8.55 | 80.20 |
HPRT | 13.97 | 86.73 |
RPL13 | 181.92 | 99.47 |
TBP | 4.80 | 71.21 |
TUB | 6.94 | 76.86 |
|
5.72 (28.35) |
[+]
Gender | Female |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 8.6 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 17581272 |
Reads passing QC | N.A. |
High quality bases | 21 |
Uniquely-mapped reads | 6348993 |
High depth bases (>=10) | 14.05% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 33 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 66.95 |
Exonic RPKM/intergenic RPKM | 112.43 |
|
RBNGS0120045 |
Kaessmann |
female |
heart |
12.68 (91.07) |
|
764.28 (99.91) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.07 | 61.87 |
GAPDH | 764.28 | 99.91 |
HMBS | 4.17 | 78.35 |
HPRT | 8.00 | 86.43 |
RPL13 | 146.42 | 99.44 |
TBP | 1.99 | 68.68 |
TUB | 4.22 | 78.48 |
|
5.25 (18.04) |
[+]
Gender | Female |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 8.2 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 28636572 |
Reads passing QC | N.A. |
High quality bases | 54 |
Uniquely-mapped reads | 9951840 |
High depth bases (>=10) | 13.41% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 75 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 67.69 |
Exonic RPKM/intergenic RPKM | 68.18 |
|
RBNGS0120050 |
Kaessmann |
male1 |
heart |
10.61 (85.72) |
|
599.06 (99.87) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.83 | 62.39 |
GAPDH | 599.06 | 99.87 |
HMBS | 7.00 | 80.17 |
HPRT | 7.42 | 81.08 |
RPL13 | 243.26 | 99.59 |
TBP | 3.26 | 69.17 |
TUB | 12.66 | 87.81 |
|
5.32 (19.07) |
[+]
Gender | Male |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 8.0 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 20815484 |
Reads passing QC | N.A. |
High quality bases | 13 |
Uniquely-mapped reads | 8848024 |
High depth bases (>=10) | 16.24% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 61 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 75.4 |
Exonic RPKM/intergenic RPKM | 92.83 |
|
RBNGS0120049 |
Kaessmann |
male1 |
cerebellum |
9.80 (81.99) |
|
647.87 (99.97) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.15 | 43.01 |
GAPDH | 647.87 | 99.97 |
HMBS | 3.74 | 67.76 |
HPRT | 15.39 | 88.38 |
RPL13 | 120.66 | 99.36 |
TBP | 5.23 | 72.19 |
TUB | 31.89 | 95.17 |
|
5.71 (26.8) |
[+]
Gender | Male |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 8.1 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 21141815 |
Reads passing QC | N.A. |
High quality bases | 11 |
Uniquely-mapped reads | 10935624 |
High depth bases (>=10) | 26.41% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 29 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 53.68 |
Exonic RPKM/intergenic RPKM | 131.37 |
|
RBNGS0120044 |
Kaessmann |
female |
cerebellum |
9.39 (82.4) |
|
544.80 (99.97) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.46 | 49.82 |
GAPDH | 544.80 | 99.97 |
HMBS | 3.50 | 67.12 |
HPRT | 25.42 | 94.62 |
RPL13 | 58.01 | 98.51 |
TBP | 5.17 | 72.52 |
TUB | 30.40 | 95.86 |
|
5.61 (23.2) |
[+]
Gender | Female |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 8.6 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 25528147 |
Reads passing QC | N.A. |
High quality bases | 10 |
Uniquely-mapped reads | 12208745 |
High depth bases (>=10) | 27.89% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 26 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 42.5 |
Exonic RPKM/intergenic RPKM | 113.09 |
|
RBNGS0120054 |
Kaessmann |
male2 |
brain |
7.84 (79.15) |
|
798.21 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.40 | 47.45 |
GAPDH | 798.21 | 99.99 |
HMBS | 3.69 | 67.32 |
HPRT | 40.19 | 96.66 |
RPL13 | 66.00 | 98.41 |
TBP | 4.40 | 69.83 |
TUB | 33.69 | 95.63 |
|
5.23 (17.01) |
[+]
Gender | Male |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 8.1 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 22554234 |
Reads passing QC | N.A. |
High quality bases | 0 |
Uniquely-mapped reads | 11071750 |
High depth bases (>=10) | 26.84% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 66 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 67.88 |
Exonic RPKM/intergenic RPKM | 112.13 |
|
RBNGS0120047 |
Kaessmann |
female |
liver |
7.45 (85.31) |
|
600.89 (99.75) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.57 | 56.68 |
GAPDH | 600.89 | 99.75 |
HMBS | 8.72 | 86.95 |
HPRT | 6.13 | 82.95 |
RPL13 | 158.98 | 99.14 |
TBP | 1.63 | 66.43 |
TUB | 0.90 | 60.57 |
|
6.19 (46.91) |
[+]
Gender | Female |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 8.2 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 21711196 |
Reads passing QC | N.A. |
High quality bases | 28 |
Uniquely-mapped reads | 10843021 |
High depth bases (>=10) | 13.81% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 24 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 110.02 |
Exonic RPKM/intergenic RPKM | 232.53 |
|
RBNGS0120048 |
Kaessmann |
male1 |
brain |
7.02 (76.22) |
|
1215.60 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 86.16 | 98.31 |
GAPDH | 1215.60 | 99.99 |
HMBS | 4.73 | 70.48 |
HPRT | 31.38 | 93.74 |
RPL13 | 167.86 | 99.31 |
TBP | 5.26 | 71.96 |
TUB | 39.01 | 95.19 |
|
7.17 (79.9) |
[+]
Gender | Male |
Age (Year) | 7 |
Origin | Deutsches Primatenzentrum, Germany |
RIN | 8.9 |
Is PE? | Y |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 101/101 |
Raw reads | 42922566 |
Reads passing QC | N.A. |
High quality bases | 69/79 |
Uniquely-mapped reads | 21348431 |
High depth bases (>=10) | 43.05% |
Transcript Fragmentation Effect | 0.82 |
High mismatch bases | 22/19 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 117.98 |
Exonic RPKM/intergenic RPKM | 153.7 |
|
RBNGS0120043 |
Kaessmann |
female |
brain |
6.47 (75.67) |
|
1041.37 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.46 | 48.38 |
GAPDH | 1041.37 | 99.99 |
HMBS | 3.02 | 64.72 |
HPRT | 37.19 | 95.57 |
RPL13 | 116.67 | 99.15 |
TBP | 4.06 | 68.57 |
TUB | 31.96 | 94.63 |
|
5.88 (36.6) |
[+]
Gender | Female |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 8.0 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 19068947 |
Reads passing QC | N.A. |
High quality bases | 0 |
Uniquely-mapped reads | 9736010 |
High depth bases (>=10) | 23.48% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 25 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 78.55 |
Exonic RPKM/intergenic RPKM | 120.48 |
|
RBNGS0120052 |
Kaessmann |
male1 |
liver |
5.92 (82.63) |
|
1067.66 (99.83) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.35 | 55.79 |
GAPDH | 1067.66 | 99.83 |
HMBS | 16.50 | 91.16 |
HPRT | 3.58 | 77.59 |
RPL13 | 425.37 | 99.57 |
TBP | 2.55 | 74.11 |
TUB | 0.82 | 62.77 |
|
6.77 (63.4) |
[+]
Gender | Male |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 7.6 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 32224651 |
Reads passing QC | N.A. |
High quality bases | 54 |
Uniquely-mapped reads | 17649134 |
High depth bases (>=10) | 18.11% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 9 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 167.36 |
Exonic RPKM/intergenic RPKM | 279.7 |
|
RBNGS0120053 |
Kaessmann |
male1 |
testis |
1.71 (57.8) |
|
79.24 (97.96) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.59 | 47.03 |
GAPDH | 79.24 | 97.96 |
HMBS | 1.46 | 56.06 |
HPRT | 19.83 | 89.23 |
RPL13 | 82.13 | 98.08 |
TBP | 108.92 | 98.79 |
TUB | 7.42 | 77.15 |
|
5.81 (32.47) |
[+]
Gender | Male |
Age (Year) | 8 |
Origin | SouZhou, China |
RIN | 8.8 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 23550934 |
Reads passing QC | N.A. |
High quality bases | 2 |
Uniquely-mapped reads | 11385400 |
High depth bases (>=10) | 24.72% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 39 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 82.71 |
Exonic RPKM/intergenic RPKM | 153.26 |
|
RBNGS0120055 |
Kaessmann |
male2 |
testis |
0.95 (54.35) |
|
73.01 (97.21) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.33 | 45.20 |
GAPDH | 73.01 | 97.21 |
HMBS | 1.23 | 56.59 |
HPRT | 13.92 | 84.94 |
RPL13 | 108.99 | 98.44 |
TBP | 157.31 | 99.16 |
TUB | 5.06 | 72.66 |
|
7.29 (81.96) |
[+]
Gender | Male |
Age (Year) | 9 |
Origin | Deutsches Primatenzentrum, Germany |
RIN | 10.0 |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-07-07 |
Read length | 76 |
Raw reads | 32751616 |
Reads passing QC | N.A. |
High quality bases | 64 |
Uniquely-mapped reads | 18699670 |
High depth bases (>=10) | 29.51% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 8 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 114.23 |
Exonic RPKM/intergenic RPKM | 203.11 |
|
RBNGS0120058 |
Norgren |
001T NHP |
testis |
13.88 (82.69) |
|
361.93 (99.82) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 4.82 | 70.11 |
GAPDH | 361.93 | 99.82 |
HMBS | 6.88 | 73.92 |
HPRT | 139.11 | 99.16 |
RPL13 | 284.40 | 99.73 |
TBP | 12.71 | 81.55 |
TUB | 11.82 | 80.63 |
|
6.63 (58.76) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Chinese |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 100/100 |
Raw reads | 14520756 |
Reads passing QC | N.A. |
High quality bases | 89/89 |
Uniquely-mapped reads | 10304875 |
High depth bases (>=10) | 36.49% |
Transcript Fragmentation Effect | 0.82 |
High mismatch bases | 14/16 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 350.79 |
Exonic RPKM/intergenic RPKM | 439.44 |
|
RBNGS0120057 |
Norgren |
001T NHP |
orbital cerebral cortex |
13.05 (82.52) |
|
465.11 (99.89) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 5.32 | 71.72 |
GAPDH | 465.11 | 99.89 |
HMBS | 9.05 | 77.89 |
HPRT | 133.30 | 99.05 |
RPL13 | 326.88 | 99.77 |
TBP | 12.57 | 81.98 |
TUB | 10.36 | 79.55 |
|
6.72 (61.34) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Chinese |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 100/100 |
Raw reads | 19175804 |
Reads passing QC | N.A. |
High quality bases | 89/89 |
Uniquely-mapped reads | 14252517 |
High depth bases (>=10) | 40.79% |
Transcript Fragmentation Effect | 0.82 |
High mismatch bases | 13/16 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 358.47 |
Exonic RPKM/intergenic RPKM | 455.02 |
|
RBNGS0120066 |
Norgren |
BF23773 |
frontal cerebral cortex |
9.97 (80.81) |
|
780.30 (99.98) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.49 | 54.01 |
GAPDH | 780.30 | 99.98 |
HMBS | 3.63 | 68.43 |
HPRT | 77.14 | 98.21 |
RPL13 | 174.90 | 99.50 |
TBP | 7.81 | 77.50 |
TUB | 68.67 | 97.82 |
|
6.58 (55.67) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 76 |
Raw reads | 16780236 |
Reads passing QC | N.A. |
High quality bases | 64 |
Uniquely-mapped reads | 13559029 |
High depth bases (>=10) | 37.05% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 9 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 312.54 |
Exonic RPKM/intergenic RPKM | 336.07 |
|
RBNGS0120065 |
Norgren |
BF23764 |
frontal cerebral cortex |
9.88 (80.42) |
|
639.64 (99.96) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 16.44 | 87.17 |
GAPDH | 639.64 | 99.96 |
HMBS | 4.67 | 70.94 |
HPRT | 86.98 | 98.56 |
RPL13 | 150.14 | 99.38 |
TBP | 9.85 | 80.39 |
TUB | 62.61 | 97.59 |
|
6.32 (50.0) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 76 |
Raw reads | 18225614 |
Reads passing QC | N.A. |
High quality bases | 54 |
Uniquely-mapped reads | 13678065 |
High depth bases (>=10) | 36.81% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 14 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 316.5 |
Exonic RPKM/intergenic RPKM | 338.3 |
|
RBNGS0120062 |
Norgren |
BF21178 |
frontal cerebral cortex |
8.90 (79.26) |
|
975.49 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.79 | 56.76 |
GAPDH | 975.49 | 99.99 |
HMBS | 4.29 | 70.26 |
HPRT | 69.98 | 97.70 |
RPL13 | 229.25 | 99.64 |
TBP | 7.60 | 77.29 |
TUB | 53.96 | 96.73 |
|
6.81 (65.98) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 76 |
Raw reads | 15131634 |
Reads passing QC | N.A. |
High quality bases | 76 |
Uniquely-mapped reads | 12659620 |
High depth bases (>=10) | 35.33% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 5 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 311.65 |
Exonic RPKM/intergenic RPKM | 350.18 |
|
RBNGS0120061 |
Norgren |
BF20336 |
frontal cerebral cortex |
8.71 (78.89) |
|
893.81 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.37 | 52.72 |
GAPDH | 893.81 | 99.99 |
HMBS | 7.28 | 76.60 |
HPRT | 68.30 | 97.67 |
RPL13 | 142.12 | 99.27 |
TBP | 6.84 | 75.81 |
TUB | 60.48 | 97.20 |
|
6.85 (68.56) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 76 |
Raw reads | 21285039 |
Reads passing QC | N.A. |
High quality bases | 74 |
Uniquely-mapped reads | 17898477 |
High depth bases (>=10) | 41.65% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 5 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 330.88 |
Exonic RPKM/intergenic RPKM | 358.83 |
|
RBNGS0120064 |
Norgren |
BF23762 |
frontal cerebral cortex |
8.62 (78.74) |
|
703.56 (99.97) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.58 | 54.94 |
GAPDH | 703.56 | 99.97 |
HMBS | 4.89 | 71.44 |
HPRT | 80.50 | 98.32 |
RPL13 | 147.20 | 99.30 |
TBP | 7.97 | 77.68 |
TUB | 65.76 | 97.73 |
|
6.35 (51.03) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 76 |
Raw reads | 21890986 |
Reads passing QC | N.A. |
High quality bases | 54 |
Uniquely-mapped reads | 16439951 |
High depth bases (>=10) | 39.65% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 14 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 328.25 |
Exonic RPKM/intergenic RPKM | 358.83 |
|
RBNGS0120060 |
Norgren |
002T NHP |
caudate nucleus |
7.98 (78.52) |
|
913.62 (99.97) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 4.49 | 71.79 |
GAPDH | 913.62 | 99.97 |
HMBS | 7.42 | 77.73 |
HPRT | 78.83 | 98.03 |
RPL13 | 119.08 | 98.94 |
TBP | 7.23 | 77.35 |
TUB | 26.33 | 91.98 |
|
6.93 (72.68) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Chinese |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 75/75 |
Raw reads | 49058614 |
Reads passing QC | N.A. |
High quality bases | 75/75 |
Uniquely-mapped reads | 43734799 |
High depth bases (>=10) | 52.63% |
Transcript Fragmentation Effect | 0.82 |
High mismatch bases | 4/4 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 434.42 |
Exonic RPKM/intergenic RPKM | 297.7 |
|
RBNGS0120056 |
Norgren |
001T NHP |
caudate nucleus |
6.23 (75.9) |
|
634.09 (99.93) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 4.71 | 72.56 |
GAPDH | 634.09 | 99.93 |
HMBS | 7.70 | 78.49 |
HPRT | 39.04 | 95.20 |
RPL13 | 204.41 | 99.53 |
TBP | 7.16 | 77.59 |
TUB | 49.24 | 96.41 |
|
6.83 (67.53) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Chinese |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 76/74 |
Raw reads | 54692880 |
Reads passing QC | N.A. |
High quality bases | 76/74 |
Uniquely-mapped reads | 47866298 |
High depth bases (>=10) | 53.61% |
Transcript Fragmentation Effect | 0.82 |
High mismatch bases | 14/9 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 478.87 |
Exonic RPKM/intergenic RPKM | 355.01 |
|
RBNGS0120063 |
Norgren |
BF22215 |
frontal cerebral cortex |
5.35 (73.47) |
|
888.73 (99.97) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.86 | 57.79 |
GAPDH | 888.73 | 99.97 |
HMBS | 3.10 | 67.73 |
HPRT | 65.68 | 97.25 |
RPL13 | 335.72 | 99.77 |
TBP | 4.59 | 71.70 |
TUB | 40.19 | 94.97 |
|
6.63 (58.76) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 76 |
Raw reads | 15356920 |
Reads passing QC | N.A. |
High quality bases | 69 |
Uniquely-mapped reads | 12350464 |
High depth bases (>=10) | 32.94% |
Transcript Fragmentation Effect | 0.95 |
High mismatch bases | 9 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 396.03 |
Exonic RPKM/intergenic RPKM | 378.94 |
|
RBNGS0120059 |
Norgren |
001T NHP |
thymus |
3.91 (71.38) |
|
898.83 (99.94) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 10.42 | 80.56 |
GAPDH | 898.83 | 99.94 |
HMBS | 9.60 | 79.64 |
HPRT | 19.50 | 87.86 |
RPL13 | 547.94 | 99.83 |
TBP | 10.39 | 80.53 |
TUB | 12.65 | 82.80 |
|
6.88 (70.1) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Chinese |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA IIx |
Submission date | 2011-06-24 |
Read length | 100/100 |
Raw reads | 23590024 |
Reads passing QC | N.A. |
High quality bases | 99/94 |
Uniquely-mapped reads | 18691140 |
High depth bases (>=10) | 41.96% |
Transcript Fragmentation Effect | 0.81 |
High mismatch bases | 8/14 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 319.07 |
Exonic RPKM/intergenic RPKM | 395.0 |
|
RBNGS0120067 |
Philipp |
individual |
brain |
0.97 (61.2) |
|
126.37 (99.90) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 25.77 |
GAPDH | 126.37 | 99.90 |
HMBS | 1.40 | 65.30 |
HPRT | 4.19 | 82.09 |
RPL13 | 26.52 | 98.94 |
TBP | 0.39 | 54.63 |
TUB | 10.46 | 94.64 |
|
2.33 (9.79) |
[+]
Gender | Male |
Age (Year) | mix five male rhesus macaques (8-40 years old) |
Origin | SuZhou, China |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA |
Submission date | 2010-02-23 |
Read length | 36 |
Raw reads | 8449292 |
Reads passing QC | N.A. |
High quality bases | 13 |
Uniquely-mapped reads | 1371013 |
High depth bases (>=10) | 0.07% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 36 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 12.79 |
Exonic RPKM/intergenic RPKM | 37.38 |
|
RBNGS0120070 |
RB |
0605151 |
fat |
29.49 (95.87) |
|
208.39 (99.62) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 7.93 | 84.03 |
GAPDH | 208.39 | 99.62 |
HMBS | 2.88 | 70.14 |
HPRT | 2.59 | 68.80 |
RPL13 | 117.31 | 99.19 |
TBP | 5.35 | 78.56 |
TUB | 4.65 | 76.51 |
|
8.59 (94.85) |
[+]
Gender | Male |
Age (Year) | 5 |
Origin | GuangXi, China |
RIN | 8.7 |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2011-12-13 |
Read length | 90/90 |
Raw reads | 120399488 |
Reads passing QC | N.A. |
High quality bases | 90/90 |
Uniquely-mapped reads | 88211684 |
High depth bases (>=10) | 53.71% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 8/13 |
SS rate | 97.72 |
Exonic RPKM/intronic RPKM | 61.89 |
Exonic RPKM/intergenic RPKM | 100.42 |
|
RBNGS0120072 |
RB |
0605151 |
kidney |
26.10 (95.9) |
|
574.03 (99.91) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.54 | 63.71 |
GAPDH | 574.03 | 99.91 |
HMBS | 4.42 | 77.23 |
HPRT | 6.67 | 83.19 |
RPL13 | 63.90 | 98.55 |
TBP | 3.97 | 75.60 |
TUB | 4.94 | 78.80 |
|
7.86 (91.75) |
[+]
Gender | Male |
Age (Year) | 5 |
Origin | GuangXi, China |
RIN | 8.0 |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2011-12-13 |
Read length | 90/90 |
Raw reads | 95733332 |
Reads passing QC | N.A. |
High quality bases | 90/90 |
Uniquely-mapped reads | 64017240 |
High depth bases (>=10) | 49.64% |
Transcript Fragmentation Effect | 0.93 |
High mismatch bases | 21/38 |
SS rate | 97.51 |
Exonic RPKM/intronic RPKM | 57.49 |
Exonic RPKM/intergenic RPKM | 70.48 |
|
RBNGS0120074 |
RB |
0605151 |
lung |
22.63 (94.15) |
|
256.42 (99.77) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 5.04 | 73.81 |
GAPDH | 256.42 | 99.77 |
HMBS | 3.14 | 66.89 |
HPRT | 8.55 | 82.48 |
RPL13 | 125.17 | 99.33 |
TBP | 6.38 | 77.65 |
TUB | 6.04 | 76.81 |
|
8.67 (97.42) |
[+]
Gender | Male |
Age (Year) | 5 |
Origin | GuangXi, China |
RIN | 8.0 |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2011-12-13 |
Read length | 90/90 |
Raw reads | 113556890 |
Reads passing QC | N.A. |
High quality bases | 90/90 |
Uniquely-mapped reads | 92952520 |
High depth bases (>=10) | 62.16% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 4/2 |
SS rate | 96.96 |
Exonic RPKM/intronic RPKM | 54.02 |
Exonic RPKM/intergenic RPKM | 139.22 |
|
RBNGS0120073 |
RB |
0605151 |
liver |
11.28 (90.5) |
|
412.47 (99.69) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 3.68 | 78.99 |
GAPDH | 412.47 | 99.69 |
HMBS | 11.24 | 90.47 |
HPRT | 6.03 | 84.68 |
RPL13 | 72.88 | 98.20 |
TBP | 2.77 | 75.66 |
TUB | 0.77 | 63.13 |
|
8.75 (98.45) |
[+]
Gender | Male |
Age (Year) | 5 |
Origin | GuangXi, China |
RIN | 7.7 |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2011-12-13 |
Read length | 90/90 |
Raw reads | 160428300 |
Reads passing QC | N.A. |
High quality bases | 90/90 |
Uniquely-mapped reads | 124278653 |
High depth bases (>=10) | 46.97% |
Transcript Fragmentation Effect | 0.91 |
High mismatch bases | 7/5 |
SS rate | 98.75 |
Exonic RPKM/intronic RPKM | 107.21 |
Exonic RPKM/intergenic RPKM | 195.96 |
|
RBNGS0120071 |
RB |
0605151 |
heart |
10.54 (93.4) |
|
654.26 (99.90) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.22 | 70.36 |
GAPDH | 654.26 | 99.90 |
HMBS | 5.14 | 87.33 |
HPRT | 8.31 | 91.67 |
RPL13 | 52.75 | 98.74 |
TBP | 1.61 | 73.62 |
TUB | 1.75 | 74.64 |
|
6.75 (62.37) |
[+]
Gender | Male |
Age (Year) | 6 |
Origin | GuangXi, China |
RIN | 8.4 |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2011-12-13 |
Read length | 90/90 |
Raw reads | 123687826 |
Reads passing QC | N.A. |
High quality bases | 90/90 |
Uniquely-mapped reads | 67659179 |
High depth bases (>=10) | 38.19% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 62/87 |
SS rate | 98.29 |
Exonic RPKM/intronic RPKM | 51.49 |
Exonic RPKM/intergenic RPKM | 36.89 |
|
RBNGS0120075 |
RB |
0605151 |
muscle |
8.83 (88.1) |
|
4525.95 (99.98) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.70 | 69.35 |
GAPDH | 4525.95 | 99.98 |
HMBS | 14.51 | 92.30 |
HPRT | 6.93 | 85.57 |
RPL13 | 134.22 | 99.26 |
TBP | 3.18 | 76.56 |
TUB | 1.41 | 67.57 |
|
8.76 (99.48) |
[+]
Gender | Male |
Age (Year) | 5 |
Origin | GuangXi, China |
RIN | 8.5 |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2011-12-13 |
Read length | 90/90 |
Raw reads | 119970848 |
Reads passing QC | N.A. |
High quality bases | 90/90 |
Uniquely-mapped reads | 88119324 |
High depth bases (>=10) | 46.69% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 7/10 |
SS rate | 98.64 |
Exonic RPKM/intronic RPKM | 127.44 |
Exonic RPKM/intergenic RPKM | 142.28 |
|
RBNGS0120069 |
RB |
0605151 |
cerebellum |
7.46 (85.11) |
|
705.06 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.95 | 67.59 |
GAPDH | 705.06 | 99.99 |
HMBS | 3.50 | 74.97 |
HPRT | 12.57 | 91.06 |
RPL13 | 41.02 | 97.93 |
TBP | 5.67 | 81.45 |
TUB | 13.64 | 91.85 |
|
7.86 (91.75) |
[+]
Gender | Male |
Age (Year) | 5 |
Origin | GuangXi, China |
RIN | 7.7 |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2011-12-13 |
Read length | 90/90 |
Raw reads | 129028146 |
Reads passing QC | N.A. |
High quality bases | 90/90 |
Uniquely-mapped reads | 95200988 |
High depth bases (>=10) | 54.23% |
Transcript Fragmentation Effect | 0.89 |
High mismatch bases | 5/4 |
SS rate | 96.04 |
Exonic RPKM/intronic RPKM | 35.36 |
Exonic RPKM/intergenic RPKM | 66.73 |
|
RBNGS0120068 |
RB |
0605151 |
brain |
5.82 (80.19) |
|
910.13 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.23 | 60.43 |
GAPDH | 910.13 | 99.99 |
HMBS | 2.64 | 69.23 |
HPRT | 33.64 | 96.83 |
RPL13 | 39.44 | 97.40 |
TBP | 4.08 | 75.14 |
TUB | 20.39 | 94.18 |
|
8.23 (93.3) |
[+]
Gender | Male |
Age (Year) | 5 |
Origin | GuangXi, China |
RIN | 7.5 |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2011-12-13 |
Read length | 90/90 |
Raw reads | 142069834 |
Reads passing QC | N.A. |
High quality bases | 90/90 |
Uniquely-mapped reads | 101198192 |
High depth bases (>=10) | 59.97% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 10/15 |
SS rate | 97.63 |
Exonic RPKM/intronic RPKM | 62.35 |
Exonic RPKM/intergenic RPKM | 73.73 |
|
RBNGS0120077 |
RB |
0605151 |
testis |
4.34 (69.65) |
|
267.33 (99.88) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.88 | 51.15 |
GAPDH | 267.33 | 99.88 |
HMBS | 3.30 | 65.29 |
HPRT | 54.99 | 98.57 |
RPL13 | 46.44 | 98.10 |
TBP | 39.31 | 97.46 |
TUB | 4.51 | 70.27 |
|
8.59 (94.85) |
[+]
Gender | Male |
Age (Year) | 5 |
Origin | GuangXi, China |
RIN | 8.5 |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2011-12-13 |
Read length | 90/90 |
Raw reads | 100724476 |
Reads passing QC | N.A. |
High quality bases | 90/90 |
Uniquely-mapped reads | 75881948 |
High depth bases (>=10) | 61.88% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 6/5 |
SS rate | 96.12 |
Exonic RPKM/intronic RPKM | 63.18 |
Exonic RPKM/intergenic RPKM | 85.96 |
|
RBNGS0120076 |
RB |
0605151 |
spleen |
3.90 (69.45) |
|
255.19 (99.72) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 6.93 | 78.02 |
GAPDH | 255.19 | 99.72 |
HMBS | 3.44 | 67.82 |
HPRT | 13.68 | 88.20 |
RPL13 | 217.77 | 99.64 |
TBP | 6.75 | 77.58 |
TUB | 3.57 | 68.33 |
|
8.62 (96.39) |
[+]
Gender | Male |
Age (Year) | 5 |
Origin | GuangXi, China |
RIN | 8.6 |
Is PE? | Y |
Is SS? | Y |
Platform | HiSeq 2000 |
Submission date | 2011-12-13 |
Read length | 90/90 |
Raw reads | 99694802 |
Reads passing QC | N.A. |
High quality bases | 90/90 |
Uniquely-mapped reads | 78807141 |
High depth bases (>=10) | 57.28% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 5/2 |
SS rate | 96.97 |
Exonic RPKM/intronic RPKM | 51.9 |
Exonic RPKM/intergenic RPKM | 129.08 |
|
RBNGS0120082 |
Soojin |
Y04-05 |
frontal pole |
2.59 (94.34) |
|
0.00 (45.92) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 45.92 |
GAPDH | 0.00 | 45.92 |
HMBS | 39.14 | 98.85 |
HPRT | 0.00 | 45.92 |
RPL13 | 365.58 | 99.73 |
TBP | 0.00 | 45.92 |
TUB | 1.15 | 92.39 |
|
3.36 (12.89) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 18 |
Raw reads | 2737481 |
Reads passing QC | N.A. |
High quality bases | 18 |
Uniquely-mapped reads | 146834 |
High depth bases (>=10) | 0.02% |
Transcript Fragmentation Effect | 0.92 |
High mismatch bases | 15 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 40.63 |
Exonic RPKM/intergenic RPKM | 53.64 |
|
RBNGS0120079 |
Soojin |
Y04-03 |
frontal pole |
0.10 (63.61) |
|
0.00 (31.36) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 31.36 |
GAPDH | 0.00 | 31.36 |
HMBS | 0.33 | 76.60 |
HPRT | 0.00 | 31.36 |
RPL13 | 34.37 | 99.35 |
TBP | 3.58 | 96.80 |
TUB | 0.09 | 63.28 |
|
2.45 (10.82) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 21 |
Raw reads | 8346120 |
Reads passing QC | N.A. |
High quality bases | 19 |
Uniquely-mapped reads | 1939710 |
High depth bases (>=10) | 0.06% |
Transcript Fragmentation Effect | 0.96 |
High mismatch bases | 21 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 5.54 |
Exonic RPKM/intergenic RPKM | 7.88 |
|
RBNGS0120088 |
Soojin |
Y04-21 |
frontal pole |
0.09 (62.93) |
|
0.00 (31.03) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.27 | 73.26 |
GAPDH | 0.00 | 31.03 |
HMBS | 0.31 | 75.46 |
HPRT | 0.00 | 31.03 |
RPL13 | 36.19 | 99.31 |
TBP | 10.92 | 98.41 |
TUB | 0.16 | 66.50 |
|
2.5 (11.86) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 21 |
Raw reads | 8240818 |
Reads passing QC | N.A. |
High quality bases | 19 |
Uniquely-mapped reads | 2057467 |
High depth bases (>=10) | 0.06% |
Transcript Fragmentation Effect | 0.96 |
High mismatch bases | 21 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 6.33 |
Exonic RPKM/intergenic RPKM | 8.77 |
|
RBNGS0120078 |
Soojin |
Y04-03 |
caudate nucleus |
0.00 (49.34) |
|
0.00 (49.34) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 49.34 |
GAPDH | 0.00 | 49.34 |
HMBS | 0.00 | 49.34 |
HPRT | 0.00 | 49.34 |
RPL13 | 0.00 | 49.34 |
TBP | 0.00 | 49.34 |
TUB | 0.00 | 49.34 |
|
1.77 (2.58) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 26 |
Raw reads | 10691560 |
Reads passing QC | N.A. |
High quality bases | 16 |
Uniquely-mapped reads | 90397 |
High depth bases (>=10) | 0.0% |
Transcript Fragmentation Effect | 0.87 |
High mismatch bases | 26 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 0.6 |
Exonic RPKM/intergenic RPKM | 0.76 |
|
RBNGS0120080 |
Soojin |
Y04-03 |
hippocampus |
0.00 (49.36) |
|
0.00 (49.36) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 49.36 |
GAPDH | 0.00 | 49.36 |
HMBS | 0.00 | 49.36 |
HPRT | 0.00 | 49.36 |
RPL13 | 0.00 | 49.36 |
TBP | 0.00 | 49.36 |
TUB | 0.00 | 49.36 |
|
1.88 (5.67) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 26 |
Raw reads | 8461525 |
Reads passing QC | N.A. |
High quality bases | 19 |
Uniquely-mapped reads | 76059 |
High depth bases (>=10) | 0.0% |
Transcript Fragmentation Effect | 0.87 |
High mismatch bases | 26 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 0.71 |
Exonic RPKM/intergenic RPKM | 0.93 |
|
RBNGS0120081 |
Soojin |
Y04-05 |
caudate nucleus |
0.00 (49.92) |
|
0.00 (49.92) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 49.92 |
GAPDH | 0.00 | 49.92 |
HMBS | 0.00 | 49.92 |
HPRT | 0.00 | 49.92 |
RPL13 | 0.00 | 49.92 |
TBP | 0.00 | 49.92 |
TUB | 0.00 | 49.92 |
|
1.68 (1.55) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 36 |
Raw reads | 1232340 |
Reads passing QC | N.A. |
High quality bases | 19 |
Uniquely-mapped reads | 20709 |
High depth bases (>=10) | 0.0% |
Transcript Fragmentation Effect | 0.76 |
High mismatch bases | 36 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 0.62 |
Exonic RPKM/intergenic RPKM | 0.84 |
|
RBNGS0120083 |
Soojin |
Y04-05 |
hippocampus |
0.00 (49.5) |
|
0.00 (49.50) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 49.50 |
GAPDH | 0.00 | 49.50 |
HMBS | 0.00 | 49.50 |
HPRT | 0.00 | 49.50 |
RPL13 | 0.00 | 49.50 |
TBP | 0.00 | 49.50 |
TUB | 0.00 | 49.50 |
|
1.9 (6.7) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 26 |
Raw reads | 8960687 |
Reads passing QC | N.A. |
High quality bases | 20 |
Uniquely-mapped reads | 55193 |
High depth bases (>=10) | 0.0% |
Transcript Fragmentation Effect | 0.84 |
High mismatch bases | 26 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 0.99 |
Exonic RPKM/intergenic RPKM | 1.29 |
|
RBNGS0120084 |
Soojin |
Y04-20 |
caudate nucleus |
0.00 (49.92) |
|
0.00 (49.92) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 49.92 |
GAPDH | 0.00 | 49.92 |
HMBS | 0.00 | 49.92 |
HPRT | 0.00 | 49.92 |
RPL13 | 0.00 | 49.92 |
TBP | 0.00 | 49.92 |
TUB | 0.00 | 49.92 |
|
1.54 (0.52) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 36 |
Raw reads | 1122643 |
Reads passing QC | N.A. |
High quality bases | 19 |
Uniquely-mapped reads | 21405 |
High depth bases (>=10) | 0.0% |
Transcript Fragmentation Effect | 0.62 |
High mismatch bases | 36 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 0.47 |
Exonic RPKM/intergenic RPKM | 0.57 |
|
RBNGS0120085 |
Soojin |
Y04-20 |
frontal pole |
0.00 (49.78) |
|
0.00 (49.78) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 49.78 |
GAPDH | 0.00 | 49.78 |
HMBS | 0.00 | 49.78 |
HPRT | 0.00 | 49.78 |
RPL13 | 465.23 | 99.92 |
TBP | 0.00 | 49.78 |
TUB | 0.00 | 49.78 |
|
2.1 (8.76) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 18 |
Raw reads | 459459 |
Reads passing QC | N.A. |
High quality bases | 17 |
Uniquely-mapped reads | 1861 |
High depth bases (>=10) | 0.0% |
Transcript Fragmentation Effect | 0.85 |
High mismatch bases | 18 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 4.73 |
Exonic RPKM/intergenic RPKM | 6.89 |
|
RBNGS0120086 |
Soojin |
Y04-20 |
hippocampus |
0.00 (49.74) |
|
0.00 (49.74) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 49.74 |
GAPDH | 0.00 | 49.74 |
HMBS | 0.00 | 49.74 |
HPRT | 0.00 | 49.74 |
RPL13 | 0.00 | 49.74 |
TBP | 0.00 | 49.74 |
TUB | 0.00 | 49.74 |
|
1.94 (7.73) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 26 |
Raw reads | 3864921 |
Reads passing QC | N.A. |
High quality bases | 21 |
Uniquely-mapped reads | 27644 |
High depth bases (>=10) | 0.0% |
Transcript Fragmentation Effect | 0.85 |
High mismatch bases | 26 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 0.76 |
Exonic RPKM/intergenic RPKM | 1.05 |
|
RBNGS0120087 |
Soojin |
Y04-21 |
caudate nucleus |
0.00 (49.4) |
|
0.00 (49.40) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 49.40 |
GAPDH | 0.00 | 49.40 |
HMBS | 0.00 | 49.40 |
HPRT | 0.00 | 49.40 |
RPL13 | 0.00 | 49.40 |
TBP | 0.00 | 49.40 |
TUB | 0.00 | 49.40 |
|
1.81 (3.61) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 26 |
Raw reads | 5257394 |
Reads passing QC | N.A. |
High quality bases | 18 |
Uniquely-mapped reads | 75561 |
High depth bases (>=10) | 0.0% |
Transcript Fragmentation Effect | 0.83 |
High mismatch bases | 26 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 0.56 |
Exonic RPKM/intergenic RPKM | 0.73 |
|
RBNGS0120089 |
Soojin |
Y04-21 |
hippocampus |
0.00 (49.46) |
|
0.00 (49.46) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.00 | 49.46 |
GAPDH | 0.00 | 49.46 |
HMBS | 0.00 | 49.46 |
HPRT | 0.00 | 49.46 |
RPL13 | 0.00 | 49.46 |
TBP | 0.00 | 49.46 |
TUB | 0.00 | 49.46 |
|
1.84 (4.64) |
[+]
Gender | N.A. |
Age (Year) | N.A. |
Origin | N.A. |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2011-11-09 |
Read length | 26 |
Raw reads | 7203273 |
Reads passing QC | N.A. |
High quality bases | 19 |
Uniquely-mapped reads | 64772 |
High depth bases (>=10) | 0.0% |
Transcript Fragmentation Effect | 0.83 |
High mismatch bases | 26 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 0.63 |
Exonic RPKM/intergenic RPKM | 0.82 |
|
RBNGS0120092 |
Wang |
individual |
kidney |
37.22 (94.29) |
|
1393.19 (99.97) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 4.53 | 71.83 |
GAPDH | 1393.19 | 99.97 |
HMBS | 9.90 | 81.47 |
HPRT | 4.44 | 71.58 |
RPL13 | 434.94 | 99.75 |
TBP | 7.41 | 78.00 |
TUB | 7.55 | 78.25 |
|
6.2 (47.94) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA |
Submission date | 2011-06-01 |
Read length | 100/100 |
Raw reads | 36793044 |
Reads passing QC | N.A. |
High quality bases | 100/74 |
Uniquely-mapped reads | 17744255 |
High depth bases (>=10) | 33.54% |
Transcript Fragmentation Effect | 0.83 |
High mismatch bases | 19/44 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 103.31 |
Exonic RPKM/intergenic RPKM | 162.49 |
|
RBNGS0120091 |
Wang |
individual |
heart |
12.92 (91.68) |
|
912.82 (99.92) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 2.59 | 74.17 |
GAPDH | 912.82 | 99.92 |
HMBS | 7.58 | 87.10 |
HPRT | 11.95 | 91.10 |
RPL13 | 124.51 | 99.29 |
TBP | 2.88 | 75.43 |
TUB | 3.30 | 77.12 |
|
4.78 (14.95) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA |
Submission date | 2011-06-01 |
Read length | 100/100 |
Raw reads | 54952900 |
Reads passing QC | N.A. |
High quality bases | 100/100 |
Uniquely-mapped reads | 22815867 |
High depth bases (>=10) | 28.28% |
Transcript Fragmentation Effect | 0.82 |
High mismatch bases | 98/99 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 60.84 |
Exonic RPKM/intergenic RPKM | 48.99 |
|
RBNGS0120093 |
Wang |
individual |
liver |
11.33 (90.3) |
|
338.16 (99.64) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 2.43 | 71.60 |
GAPDH | 338.16 | 99.64 |
HMBS | 6.63 | 84.75 |
HPRT | 6.18 | 83.80 |
RPL13 | 87.63 | 98.66 |
TBP | 2.64 | 72.61 |
TUB | 1.78 | 68.10 |
|
5.98 (43.3) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA |
Submission date | 2011-06-01 |
Read length | 100/100 |
Raw reads | 44920326 |
Reads passing QC | N.A. |
High quality bases | 84/79 |
Uniquely-mapped reads | 15413163 |
High depth bases (>=10) | 23.5% |
Transcript Fragmentation Effect | 0.81 |
High mismatch bases | 13/31 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 101.63 |
Exonic RPKM/intergenic RPKM | 261.03 |
|
RBNGS0120090 |
Wang |
individual |
brain |
7.00 (75.88) |
|
917.80 (99.99) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 1.85 | 59.44 |
GAPDH | 917.80 | 99.99 |
HMBS | 3.72 | 67.06 |
HPRT | 55.99 | 97.32 |
RPL13 | 141.37 | 99.32 |
TBP | 5.21 | 71.54 |
TUB | 30.43 | 94.02 |
|
6.28 (48.97) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA |
Submission date | 2011-06-01 |
Read length | 100/100 |
Raw reads | 40917070 |
Reads passing QC | N.A. |
High quality bases | 100/79 |
Uniquely-mapped reads | 16321514 |
High depth bases (>=10) | 39.52% |
Transcript Fragmentation Effect | 0.82 |
High mismatch bases | 8/38 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 104.21 |
Exonic RPKM/intergenic RPKM | 127.68 |
|
RBNGS0120094 |
Wang |
individual |
muscle |
5.48 (82.8) |
|
5119.89 (99.98) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 3.77 | 78.53 |
GAPDH | 5119.89 | 99.98 |
HMBS | 11.41 | 89.71 |
HPRT | 6.95 | 85.21 |
RPL13 | 253.40 | 99.57 |
TBP | 2.29 | 73.08 |
TUB | 1.42 | 68.36 |
|
6.58 (55.67) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA |
Submission date | 2011-06-01 |
Read length | 100/100 |
Raw reads | 50563532 |
Reads passing QC | N.A. |
High quality bases | 100/99 |
Uniquely-mapped reads | 28711008 |
High depth bases (>=10) | 31.59% |
Transcript Fragmentation Effect | 0.81 |
High mismatch bases | 9/12 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 217.19 |
Exonic RPKM/intergenic RPKM | 194.53 |
|
RBNGS0120095 |
Wang |
individual |
testis |
2.24 (60.02) |
|
118.24 (98.89) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.81 | 50.31 |
GAPDH | 118.24 | 98.89 |
HMBS | 1.37 | 55.05 |
HPRT | 56.06 | 96.41 |
RPL13 | 162.73 | 99.39 |
TBP | 128.40 | 99.07 |
TUB | 6.60 | 73.48 |
|
6.42 (53.09) |
[+]
Gender | Male |
Age (Year) | N.A. |
Origin | Indian |
RIN | N.A. |
Is PE? | Y |
Is SS? | N |
Platform | GA |
Submission date | 2011-06-01 |
Read length | 100/100 |
Raw reads | 46007760 |
Reads passing QC | N.A. |
High quality bases | 100/84 |
Uniquely-mapped reads | 20020889 |
High depth bases (>=10) | 41.27% |
Transcript Fragmentation Effect | 0.84 |
High mismatch bases | 5/32 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 90.84 |
Exonic RPKM/intergenic RPKM | 159.7 |
|
RBNGS0120096 |
Yi |
individual |
cerebellum |
10.00 (81.35) |
|
520.64 (99.96) Full
[+]
Gene | RPKM | Percentile Rank |
ACTB | 0.48 | 48.69 |
GAPDH | 520.64 | 99.96 |
HMBS | 5.60 | 72.37 |
HPRT | 17.52 | 89.39 |
RPL13 | 134.40 | 99.45 |
TBP | 6.34 | 74.37 |
TUB | 28.56 | 94.13 |
|
5.7 (25.26) |
[+]
Gender | Female/Male |
Age (Year) | mix of two Female of 11, 8 years old and one Male |
Origin | San Antonio, TX, USA |
RIN | N.A. |
Is PE? | N |
Is SS? | N |
Platform | GA II |
Submission date | 2010-08-16 |
Read length | 35 |
Raw reads | 18730642 |
Reads passing QC | N.A. |
High quality bases | 35 |
Uniquely-mapped reads | 13914383 |
High depth bases (>=10) | 17.15% |
Transcript Fragmentation Effect | 0.94 |
High mismatch bases | 8 |
SS rate | 0.0 |
Exonic RPKM/intronic RPKM | 58.32 |
Exonic RPKM/intergenic RPKM | 126.46 |
|